Evaluating MAVE Functional Assays
Guidance on how to use Functional Evidence in your Clinical Practice
Functional Evidence (and how to use it)
Interested in how to use Functional Evidence?
Workshop(s) covering central recommendations and guidelines on functional evidence use (Richards et al., 2015 and Brnich et al., 2019) along with recommendations on evaluating MAVE functional assays.
Workshop Nov 2023: Functional evidence and how to use it (Villani & Spurdle)
https://zenodo.org/records/13129941 (slides)
Functional evidence and how to use it (<<Video tutorial)
Workshop June 2024: Functional evidence evaluation (Villani & Spurdle)
https://zenodo.org/records/13131424 (slides)
Functional evidence evaluation (<<Video tutorial)
The workshop activities mentioned above are part of the MAVE Education Project. The MAVE Education Project aims to support increased use of functional data/evidence, especially with the increasing body of high throughput functional data. It is an Australian research project funded by the Medical Research Future Fund, APP2015946. The workshop was co-designed, informed by representatives of identified stakeholders in the MAVE Education Project and represents part of a developing project supporting functional evidence use.
Videos:
“The Clinical Genome Resource (ClinGen): An overview” - Courtney Thaxton’s presentation at the 7th Annual Mutational Scanning Symposium (2024)
"Clinical classification of variation for disease causality" - Heidi Rehm’s (keynote), presentation at the 7th Annual Mutational Scanning Symposium (2024)
Coursework / Classes:
Interpreting Genomic Variation: Overcoming Challenges in Diverse Populations (Wellcome Connecting Science)
https://www.futurelearn.com/courses/interpreting-genomic-variation-overcoming-challenges-in-diverse-populations
Course Instructor includes Julia Foreman (co-chair of DCD workstream) MAVEs are included in her section of the course
Additional Resources / Reading:
Standards and guidelines for the interpretation of sequence variants (Richards et al, 2015)
Recommendations for the collection and use of multiplexed functional data for clinical variant interpretation (Gelman et al, 2019)
Recommendations for application of the functional evidence PS3/BS3 criterion using the ACMG/AMP sequence variant interpretation framework (Brnich et al, 2020)
Workshop report: the clinical application of data from multiplex assays of variant effect (MAVEs), 12 July 2023 (Allen et al, 2023)